水稻科學(xué)數(shù)據(jù)平臺(tái)的創(chuàng)建及應(yīng)用

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1、中國水稻科學(xué)(ChinJRiceSci),２０１５,２９(６):６５３－６５７http://www．ricesci．cnDOI:１０．３９６９/ji．ssn．１００１Ｇ７２１６．２０１５．０６．０１２６５３水稻科學(xué)數(shù)據(jù)平臺(tái)的創(chuàng)建及應(yīng)用鄂志國１王磊１,２,?(１中國水稻研究所,杭州３１０００６;２水稻生物學(xué)國家重點(diǎn)實(shí)驗(yàn)室,杭州３１０００６;?通訊聯(lián)系人,EＧmail:wanglei０５＠caas．cn)ConstructionandApplicationofPlatformforRiceScientificDataEZhiＧguo１,WANGLe

2、i１,２,?(１ChinaNationalRiceResearchInstitute,Hangzhou３１０００６,China;２StateKeyLaboratoryofRiceBiology,Hangzhou３１０００６,China;?Correspondingauthor,EＧmail:wanglei０５＠caasc．n)EZhiguo,WANGLei．Constructionandapplicationofplatformforricescientificdata．ChinJRiceSci,２０１５,２９(６):６５３Ｇ６５７．Abstr

3、act:ChineseNationalRiceDataCenter(http://www．ricedata．cn,CRDC)isanintegratedscientificplatformforriceresearchacrossmultiplesubjects．Firstly,thedatabaseforChinesericevarietiesandtheirgenealogy(DRVG)isestablishedincludingafingerprintdatasetforwidelyＧgrownvarietiesandadatasetfo

4、rtheexcellentgermplasm．Moreover,thegenealogytreeandtheassessmentmethodofbackboneparentsaredevelopedforDRVG．Secondly,thedatabaseforricefunctionalgenes(DRFG)isbuilt,whichintroducesricefunctionalgenescollectedfromthereferencesathomeandabroadandhavetwochartgenerationprogramsforg

5、eneticmapsandgenestructuresthroughbrowsers．Inaddition,theDRFGsetsupadatasetofmolecularmarkersforimportantfunctionalandbeneficialgenesinbreeding．Thirdly,anontologysystemisindependentlyproducedforknowledgemanagement,andappliedtomanagethedatabaseforDRFGandreferencedocuments．The

6、CRDCplatformbuiltsabridgebetweenbiologicdataandbreedingneeds,whichiswidelyusedinthedomesticandexertsagrowinginfluence．Keywords:rice;database;variety;gene;ontology鄂志國,王磊．水稻科學(xué)數(shù)據(jù)平臺(tái)的創(chuàng)建及應(yīng)用．中國水稻科學(xué),２０１５,２９(６):６５３Ｇ６５７．摘要:國家水稻數(shù)據(jù)中心(http://www．ricedata．cn)是一個(gè)以水稻為研究對象,融貫多學(xué)科的綜合性數(shù)據(jù)平臺(tái).它創(chuàng)建了

7、中國水稻品種及其系譜數(shù)據(jù)庫,構(gòu)建大品種指紋數(shù)據(jù)集和優(yōu)異種質(zhì)數(shù)據(jù)集,開發(fā)“系譜樹”和骨干親本算法;創(chuàng)建了水稻功能基因數(shù)據(jù)庫,以文獻(xiàn)析出的方式整合國內(nèi)外報(bào)道的水稻功能基因,開發(fā)基于瀏覽器的遺傳圖譜生成程序和基因結(jié)構(gòu)圖生成程序,構(gòu)建重要功能基因的分子標(biāo)記數(shù)據(jù)集和育種上有利基因的整合數(shù)據(jù)集;自主開發(fā)了用于知識(shí)管理的本體系統(tǒng),開創(chuàng)性地將此系統(tǒng)應(yīng)用于水稻功能基因數(shù)據(jù)庫和參考文獻(xiàn)數(shù)據(jù)庫的管理.平臺(tái)致力于在生物數(shù)據(jù)與育種需求之間架起一座橋梁,目前已得到廣泛應(yīng)用,在國內(nèi)產(chǎn)生重要影響.關(guān)鍵詞:水稻;數(shù)據(jù)庫;品種;基因;本體中圖分類號:S５１１?０２３文獻(xiàn)標(biāo)識(shí)碼:A

8、文章編號:１００１Ｇ７２１６(２０１５)０６Ｇ０６５３Ｇ０５隨著計(jì)算機(jī)技術(shù)和生物學(xué)研究的快速發(fā)展與相中挖掘有用信息提供給育種家或其他學(xué)者以服務(wù)于互間的